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java.lang.Objectorg.gersteinlab.act.BinFileCreator
public class BinFileCreator
This class converts an input signal file into a bin file with a specified bin size. The total length of each chromosome is specified in the configuration file.
Field Summary | |
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static java.lang.String |
BIN_BINARY
Use the presence of signal as the summary statistic of a bin. |
protected static int |
BIN_BINARY_ID
Use the presence of signal as the summary statistic of a bin. |
static java.lang.String |
BIN_MAX
Use the maximum signal as the summary statistic of a bin. |
protected static int |
BIN_MAX_ID
Use the maximum signal as the summary statistic of a bin. |
static java.lang.String |
BIN_MEAN
Use the mean signal as the summary statistic of a bin. |
protected static int |
BIN_MEAN_ID
Use the mean signal as the summary statistic of a bin. |
Constructor Summary | |
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BinFileCreator()
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Method Summary | |
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static void |
main(java.lang.String[] argv)
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final java.lang.String BIN_MEAN
public static final java.lang.String BIN_MAX
public static final java.lang.String BIN_BINARY
protected static final int BIN_MEAN_ID
protected static final int BIN_MAX_ID
protected static final int BIN_BINARY_ID
Constructor Detail |
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public BinFileCreator()
Method Detail |
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public static void main(java.lang.String[] argv) throws java.lang.Exception
java.lang.Exception
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