org.gersteinlab.act
Class BinFileCreator

java.lang.Object
  extended by org.gersteinlab.act.BinFileCreator

public class BinFileCreator
extends java.lang.Object

        This class converts an input signal file into a bin file with a
        specified bin size. The total length of each chromosome is specified in
        the configuration file.
        


Field Summary
static java.lang.String BIN_BINARY
          Use the presence of signal as the summary statistic of a bin.
protected static int BIN_BINARY_ID
          Use the presence of signal as the summary statistic of a bin.
static java.lang.String BIN_MAX
          Use the maximum signal as the summary statistic of a bin.
protected static int BIN_MAX_ID
          Use the maximum signal as the summary statistic of a bin.
static java.lang.String BIN_MEAN
          Use the mean signal as the summary statistic of a bin.
protected static int BIN_MEAN_ID
          Use the mean signal as the summary statistic of a bin.
 
Constructor Summary
BinFileCreator()
           
 
Method Summary
static void main(java.lang.String[] argv)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

BIN_MEAN

public static final java.lang.String BIN_MEAN
Use the mean signal as the summary statistic of a bin.

See Also:
Constant Field Values

BIN_MAX

public static final java.lang.String BIN_MAX
Use the maximum signal as the summary statistic of a bin.

See Also:
Constant Field Values

BIN_BINARY

public static final java.lang.String BIN_BINARY
Use the presence of signal as the summary statistic of a bin.

See Also:
Constant Field Values

BIN_MEAN_ID

protected static final int BIN_MEAN_ID
Use the mean signal as the summary statistic of a bin.

See Also:
Constant Field Values

BIN_MAX_ID

protected static final int BIN_MAX_ID
Use the maximum signal as the summary statistic of a bin.

See Also:
Constant Field Values

BIN_BINARY_ID

protected static final int BIN_BINARY_ID
Use the presence of signal as the summary statistic of a bin.

See Also:
Constant Field Values
Constructor Detail

BinFileCreator

public BinFileCreator()
Method Detail

main

public static void main(java.lang.String[] argv)
                 throws java.lang.Exception
Throws:
java.lang.Exception